1 Yang, S. W., Huang, X. *, Lin, W., Min, J., Miller, D. J., Mayasundari, A., Rodrigues, P., Griffith, E. C., Gee, C. T., Li, L., Li, W., Lee, R. E., Rankovic, Z., Chen, T. & Potts, P. R. Structural basis for substrate recognition and chemical inhibition of oncogenic MAGE ubiquitin ligases. Nat Commun 11, 4931 (2020). (proof-of-principle (PoP) 开发基于 MAGE的靶向肿瘤细胞而非正常细胞的PROTAC分子)
2 Patel, A. G., Chen, X., Huang, X. *, Clay, M. R., Komorova, N., Krasin, M. J., Pappo, A., Tillman, H., Orr, B. A., McEvoy, J., Gordon, B., Blankenship, K., Reilly, C., Zhou, X., Norrie, J. L., Karlstrom, A., Yu, J., Wodarz, D., Stewart, E. & Dyer, M. A. The myogenesis program drives clonal selection and drug resistance in rhabdomyosarcoma. Dev Cell 57, 1226-1240 e1228 (2022).(在实体瘤和白血病队列中整合多组学数据,发现新的药物靶点或克服药物抗性的靶点)
3 Huang, X., Zheng, Y., Zhang, F., Wei, Z., Wang, Y., Carrell, R. W., Read, R. J., Chen, G. Q. & Zhou, A. Molecular Mechanism of Z alpha1-Antitrypsin Deficiency. J Biol Chem 291, 15674-15686 (2016).(应用生物物理,结构,细胞与分子生物学手段,研究疾病中小分子药物与靶蛋白的相互作用机制)
4 Liu, C. X., Yin, Q. Q., Zhou, H. C., Wu, Y. L., Pu, J. X., Xia, L., Liu, W., Huang, X., Jiang, T., Wu, M. X., He, L. C., Zhao, Y. X., Wang, X. L., Xiao, W. L., Chen, H. Z., Zhao, Q., Zhou, A. W., Wang, L. S., Sun, H. D. & Chen, G. Q. Adenanthin targets peroxiredoxin I and II to induce differentiation of leukemic cells. Nat Chem Biol 8, 486-493 (2012).
5 Zhu, Z., Li, C., Zeng, Y., Ding, J., Qu, Z., Gu, J., Ge, L., Tang, F., Huang, X., Zhou, C., Wang, P., Zheng, D. & Jin, Y. PHB Associates with the HIRA Complex to Control an Epigenetic-Metabolic Circuit in Human ESCs. Cell Stem Cell 20, 274-289 e277 (2017).
6 Gocho, Y., Liu, J., Hu, J., Yang, W., Dharia, N. V., Zhang, J., Shi, H., Du, G., John, A., Lin, T. N., Hunt, J., Huang, X., Ju, B., Rowland, L., Shi, L., Maxwell, D., Smart, B., Crews, K. R., Yang, W., Hagiwara, K., Zhang, Y., Roberts, K., Wang, H., Jabbour, E., Stock, W., Eisfelder, B., Paietta, E., Newman, S., Roti, G., Litzow, M., Easton, J., Zhang, J., Peng, J., Chi, H., Pounds, S., Relling, M. V., Inaba, H., Zhu, X., Kornblau, S., Pui, C. H., Konopleva, M., Teachey, D., Mullighan, C. G., Stegmaier, K., Evans, W. E., Yu, J. & Yang, J. J. Network-based systems pharmacology reveals heterogeneity in LCK and BCL2 signaling and therapeutic sensitivity of T-cell acute lymphoblastic leukemia. Nat Cancer 2, 284-299 (2021).
7 Zhao, X., Wang, P., Diedrich, J. D., Smart, B., Reyes, N., Yoshimura, S., Zhang, J., Yang, W., Barnett, K., Xu, B., Li, Z., Huang, X., Yu, J., Crews, K., Yeoh, A. E. J., Konopleva, M., Wei, C. L., Pui, C. H., Savic, D. & Yang, J. J. Epigenetic activation of the FLT3 gene by ZNF384 fusion confers a therapeutic susceptibility in acute lymphoblastic leukemia. Nat Commun 13, 5401 (2022).
8 Li, Z., Chang, T. C., Junco, J. J., Devidas, M., Li, Y., Yang, W., Huang, X., Hedges, D. J., Cheng, Z., Shago, M., Carroll, A. J., Heerema, N. A., Gastier-Foster, J. M., Wood, B. L., Borowitz, M. J., Sanclemente, L., Raetz, E. A., Hunger, S. P., Feingold, E., Rosser, T. C., Sherman, S. L., Loh, M. L., Mullighan, C. G., Yu, J., Wu, G., Lupo, P. J., Rabin, K. R. & Yang, J. J. Genomic landscape of Down syndrome-associated acute lymphoblastic leukemia. Blood (2023).
9 Ding, L., Shi, H., Qian, C., Burdyshaw, C., Veloso, J. P., Khatamian, A., Pan, Q., Dhungana, Y., Xie, Z., Risch, I., Yang, X., Huang, X., Yan, L., Rusch, M., Brewer, M., Yan, K. K., Chi, H. & Yu, J. scMINER: a mutual information-based framework for identifying hidden drivers from single-cell omics data. bioRxiv, 2023.2001. 2026.523391 (2023).